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Re: cRIO not letting me deploy code.
Are you talking about the LabVIEW dialog that shows a bunch of running VIs on the cRIO? That's not an error. It's just an informative message, basically letting you know that it's going to have to stop those VIs in order to replace them with the copies you're trying to deploy, and giving you a chance to change your mind before continuing.
Just tell it everything is okay and it should work as you want.
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