yes, that would be a problem. Here's the code I used:
Code:
jag3 = new CANJaguar(3,CANJaguar.ControlMode.kSpeed);
jag3.setPID(.01, .01, 0);
jag3.setSpeedReference(CANJaguar.SpeedReference.kQuadEncoder);
jag3.configEncoderCodesPerRev(100);
jag3.enableControl();