Did you fix the db37 cable (the ribbon cable connecting the digital sidecar to the cRio) if not then the jaguars/victors will not work in ports 1 and 2. they will in ports 3 and 4 (we figured that out after a lot of testing)
here is the document on fixing the cable if it applies:
http://www.usfirst.org/sites/default...structions.pdf