[Alan Anderson]

"Deploy" is usually not the appropriate command. Instead, choose "Run as startup". If you checked the "always run deployed code" option when you imaged the cRIO, a simple "Deploy" can work, but it's best to be explicit about what you want.

If you created the project on a different computer or in a different directory from where it is now, you might have to fix the Build Specifications to correct a directory link that now points to the wrong places. Right-click on the FRC Robot Boot-up Deployment and choose Properties, then go through the categories to make sure all of the folder names match the location of the project. Check specifically the "Local destination directory" in the Information category.