[xXhunter47Xx]

I think I had that same problem.
Do you just deploy it from RobotMain.vi? Because that's just debug mode, the cRIO won't retain the code.
You have to build the code and then run it as startup.
Go to build specifications on your main project page.
Click it, then right click FRC Bootup Development or something along those lines
Click build (doesn't have to be connected to build)
Once it's built, connect to the robot, right click it again and this time don't click build click run as startup.
Once it's deployed it will prompt you to reboot the cRIO. Power cycle the robot.
It should work now.