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Alright for a start....did you try checking things out with the real configurator that comes with windows? Search for the program disk managment and it will tell you if anything is not normal. Keep in mind the file system does take up some hard drive space, not 12gb though. When you install a new version of windows onto a drive without formatting you always get some lost space as well. You could have also changed the file system when you did this, which means now you have 2 file systems on the one drive but only one active. That could account for some of the space. Some viruses also make disk space unusable and the virus could still be on your computer now since you kept your old files on, and just reinstalled windows.
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