[ConKbot of Doom]

If you look at the beginning of User_Autonomous_Code() you see

while (autonomous_mode)   /* DO NOT CHANGE! */
  {
    if (statusflag.NEW_SPI_DATA)      /* 26.2ms loop area */
    {
        Getdata(&rxdata);   /* DO NOT DELETE, or you will be stuck here forever! */

the non-autonomous mode code only excecutes on the first cycle of the autonomous mode, after that, it is in that loop there.

So that gets executed every 26.2ms, and Process_Data_From_Master_uP() is not.

I'm not sure what you are asking, do you want to know how long it takes for the code to run?