Go ahead and change them. There is nothing wrong/illegal about that.
Just make sure you know what you are doing!
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I'm not sure if you can change it. It's been a couple of years since I've even tried, but several of the files (those that say "Do Not Change" or something like that) used to be locked so you couldn't change them
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Who cares what the comments say

And if they are locked, just take out the write protection (right click in explorer)