[EHaskins]

If you aren't communicating with the master proc, by callin GetData and PutData, the master assumes the user proc is locked.

EDIT:

  int timer;
  while (autonomous_mode)   /* DO NOT CHANGE! */
  {
	  if (statusflag.NEW_SPI_DATA)      /* 26.2ms loop area */
	  {
                            timer++;
		  Getdata(&rxdata);   /* DO NOT DELETE, or you will be stuck here forever! */
		  //Put your code here
                           if (timer < 900){}
                           else if (timer < 1000 {}
                           //ect.

		  Putdata(&txdata);   /* DO NOT DELETE, or you will get no PWM outputs! */
	  }
  }