[Mikesername]

Don't know if this is what you need, but here's a problem my team solved today with the help of someone who worked with the controller (or something like, that...)

Anyway, don't just deploy the VI. That just stores it in your cRIO's RAM. What you need to do is, in project explorer, click "Build Specifications" at the bottom and then right click FRC Basic Robot Deployment. Next, click "Build". When that's done click "Deploy". Then once that's done, click "Run as startup".

After this we had some trouble getting the lights on our Jaguars to stop blinking but we fixed it by unhooking the computer (we were hard-wired in) and flipping the driver station from autonomous to teleop once or twice (that sometimes catches it).

After that we tested it by rebooting and it worked.