Update:
The DS displays
System : Watchdog
when the code is deployed. Have followed the diagnostic steps from the NI website:
http://decibel.ni.com/content/docs/DOC-2957
The RSL on the Digitial Side car has a slow blink
The versions on the DS is 2009-02-10a3
The version of Labview is 3.0a
The Imaging tool shows FRC_2009_v11.Zip but as Doug say, cannot confirm that is actually running on the cRIO