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I wonder if any of the LabVIEW devs know anything about using Git and all the such.
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If by devs, you mean developers, I'm in that camp, and I've asked around and nobody has yet used Git for any project. If you LabVIEW users, then the LV forums would be a good place to ask.
It sounds like you are having issues getting the LV diff and merge tools to integrate into Git. I was actually going to look at it from the opposite direction, and use the command line interface to Git so that it could be invoked for check out, in, etc. I won't get to look at it until next weekend at the earliest.
Greg McKaskle