Try right-clicking the 'Robot Main' VI in the Project Explorer window and clicking 'Run' to live debug. This should download the code on your computer to the cRIO's memory and it will run as long as that computer is connected to the cRIO and the program is running.
Then on the driver station make sure you're enabled. [F1] to enable; [Space bar] to disable.
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Could it be that we have not run Jaguar update and if so HOW do we run the update?
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I think you're referring to the Jaguar Firmware update. If so, you don't need to worry about it unless you're planning on using a CAN (controller-area network) interface as opposed to PWM cables from the Digital Sidecar.
For more info on CAN, check out
http://forums.usfirst.org/showthread.php?t=13579 and
http://forums.usfirst.org/showthread.php?t=13440&page=3
Hope this helps!
Parker Lusk
Shockwave Team 1742