[Vikesrock]

I would double check that you have set the proper Autonomous to execute in Begin.VI. The default is Autonomous Independent if I recall correctly.

Also, make sure that you are feeding the watchdog appropriately in Autonomous mode.

The best way to debug what's going on is going to be by running your Autonomous on the practice field. Look for errors on the driver station Diagnostics tab. If you don't see any and Autonomous is still not do anything, run your code from a computer instead of deploying it, this will allow you to use probes to see what is happening in your code.