<G64> This defines the "AUTONOMOUS SCORE" this is a score created by the ubertube positions. No where does it say ubertubes may only count for this. Though if my <G66> interpretation is false, then yes ubertube is only calculated in this.
<G65> This defines the "PEG SCORE" this is a score created by logo pieces position. Ubertubes are only mentioned as doubling a scoring peg's value.
<G66> This defines the "LOGO BONUS" this is a multiplier on the assigned points from the scoring pegs,
Quote:
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SCORING PEG(PEG) - one of nine round, horizontal pieces on each SCORING GRID. Each PEG can hold up to two GAME PIECES.
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As I see this the assigned points are all the points assigned to each scoring peg in that row are effectively doubled.
As the AUTONOMOUS SCORE had points assigned to that peg, I see it as counting.
Though the "effectively doubling the score of the row" <G66> does point to intend ubertubes not counting but as it says effectively I will say this is not an absolute law, therefore just an observation of what the Game Designing Committee saw in the effect of the LOGO BONUS.