Jaguar Blinking Yellow

[meltbox360]

I am leaning toward either a broken cable at the moment as I have found that initializing a Jaguar appears to init a relay. EG I init PWM 1 as a Jaguar and instead relay 1 lights up green. Any thoughts?

EDIT: As a side note. The code that works for me in tele-op uses RobotDrive however it now refuses to drive the motors 100% forward but will drive them at 100% in reverse. More strange stuff?

Just to make sure what should all the lights on the cRIO FRC II be lit up as? Just want to make sure I didn't overlook those stupidly.