crio not running new code

[Nicandy]

Hey there, i'm having trouble with compiling code onto the crio. When I go to deploy the robot main vi with the modified code, it compiles correctly, but when I go into the driver station to test my new code, none of my changes are there. Say, if I change the pwm mapping on my joystick code, or switch the usb port name for the joystick, it seemingly reverts to the original code where that change hadn't occurred. Is there something i'm missing when i'm deploying code? This is my second year with labVIEW, and I don't recall ever having this problem before. Many thanks in advance.