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Originally Posted by Sachiel7
I also suggest that while recording auto modes, don't use interrupts. I've taken the code sample from a previous post (btw, thanks to whoever wrote it, can't jump back to it right now) and it won't write right (aw man...) if you interrupt it.  or at least there's a chance it won't.
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Thats why in the manual it says to disable interrupts before writing...
See my EEPROM writing code
here for an example.
Similar should also apply for writing to the FLASH. (which if you aren't already using, would be a way to get more storage space...)