Talon srx and breakout board with encoder doesnt work right

[FancyGerald]

My setup is a talon srx connected via CAN with an andymark breakout board with an andymark cimcoder connected to the breakout board. My code is receiveing the encoder position from the CANTalon object in java. The encoder value counts upwards correctly and will not count correctly backwards.Both channel A and B work correctly because we have tryed to switch the channels on the breakout board and have also pluged them directly into the roborio. What am I missing, encoders work fine and the talon srx is working fine breakout board has no shorts and is wired correctly?