Permanent Code different than temporary

[Delian]

I am having a problem which I did not realize until te day of the scrimmage when I kep permanent code on the robot and flipped into autonomous. Absolutely everything was the same, except for image recognition. To make sure that the target was not flipped upside down we tried both types of targets. Then to make usr eit was not old code I temporarily deployed the same code and image recognition was working perfectly. I tried putting all the VIs into Always Included and Basic Robot Main as Startup VI. Is there something else I have to put into startup VI or some special way of opening the IMAQ when I am trying to do image recognition permanently. Quick help would be appreciated so we can test it our before our robot ships tomorrow.