Multiple errors with WPILIB in Eclipse

Hello CD. I am having many build errors with trying to build any project. It seems to be something wrong with the std namespace and with some header files for threading. It first started out as some wpilib header files saying it’s missing pthread.h, then after installing pthead-32 through MinGW I got quite a few std errors saying std does not name a type “so and so”. It may have something to do with the tool chains being dumb or the libraries, since I used a new computer and installed Eclipse with the plug-ins and tool chains and then created a new example project and it still not working, leaves me to think it’s frc’s fault. I do not know.

I have tried:
Reinstalling everything from scratch.
Creating a default example robot project.
Trying 3 different computers (one of them being a Linux os) one window 8.1,other one windows 10.
Using a computer with WPILIB never installed before.
Useing cygwin.
Adding everything into the paths for includes and libraries manually.
Messing with different tool chains and builders.
Crying.
Almost all fixes I can find through Google search.

I am really at a stand still and can’t deploy code because of no binaries being built. This has taken much of my time and I really need help. Thank you. Here is the error when building for cygwin:

 
21:14:22 **** Incremental Build of configuration Debug for project Stronghold with onboard vision ****
Info: Configuration "Debug" uses tool-chain "Cygwin GCC" that is unsupported on this system, attempting to build anyway.
Info: Internal Builder is used for build
g++ "-IC:\\Users\\NerdsOfPrey/wpilib/cpp/current/include" -O0 -g3 -Wall -c -fmessage-length=0 -std=c++11 -o "src\\Commands\\WaterBridge.o" "..\\src\\Commands\\WaterBridge.cpp" 
In file included from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_mutex.h:20:0,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/ErrorBase.h:13,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/Commands/Command.h:11,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/Commands/CommandGroup.h:11,
                 from ..\src\Commands\WaterBridge.h:16,
                 from ..\src\Commands\WaterBridge.cpp:13:
c:\mingw\include\pthread.h:320:8: error: redefinition of 'struct timespec'
 struct timespec {
        ^
In file included from c:\mingw\include	ime.h:53:0,
                 from c:\mingw\lib\gcc\mingw32\4.8.1\include\c++\ctime:42,
                 from c:\mingw\lib\gcc\mingw32\4.8.1\include\c++\chrono:41,
                 from c:\mingw\lib\gcc\mingw32\4.8.1\include\c++\mutex:39,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_mutex.h:11,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/ErrorBase.h:13,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/Commands/Command.h:11,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/Commands/CommandGroup.h:11,
                 from ..\src\Commands\WaterBridge.h:16,
                 from ..\src\Commands\WaterBridge.cpp:13:
c:\mingw\include\parts	ime.h:105:8: error: previous definition of 'struct timespec'
 struct timespec
        ^
In file included from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/ErrorBase.h:13:0,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/Commands/Command.h:11,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/Commands/CommandGroup.h:11,
                 from ..\src\Commands\WaterBridge.h:16,
                 from ..\src\Commands\WaterBridge.cpp:13:
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_mutex.h:49:59: error: cannot convert '<brace-enclosed initializer list>' to 'pthread_mutex_t' in initialization
       {0, 0, 0, 0x20 | PTHREAD_MUTEX_RECURSIVE_NP, 0, {0}}};
                                                           ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_mutex.h:79:30: error: cannot convert '<brace-enclosed initializer list>' to 'pthread_mutex_t' in initialization
       {0, 0, 0, 0x20, 0, {0}}};
                              ^
In file included from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/Semaphore.hpp:3:0,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/HAL.hpp:24,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/SPI.h:10,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/ADXL345_SPI.h:12,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/WPILib.h:16,
                 from ..\src\Commands\../Robot.h:15,
                 from ..\src\Commands\Unscoop.h:17,
                 from ..\src\Commands\WaterBridge.h:17,
                 from ..\src\Commands\WaterBridge.cpp:13:
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:27:11: error: 'condition_variable' in namespace 'std' does not name a type
   typedef std::condition_variable::native_handle_type native_handle_type;
           ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:63:3: error: 'cv_status' in namespace 'std' does not name a type
   std::cv_status wait_until(Lock& _lock,
   ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:87:3: error: 'cv_status' in namespace 'std' does not name a type
   std::cv_status wait_for(Lock& lock, const std::chrono::duration<Rep, Period>& rtime) {
   ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:97:3: error: 'native_handle_type' does not name a type
   native_handle_type native_handle() {
   ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:102:3: error: 'condition_variable' in namespace 'std' does not name a type
   std::condition_variable m_cond;
   ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:103:19: error: 'mutex' is not a member of 'std'
   std::shared_ptr<std::mutex> m_mutex;
                   ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:103:19: error: 'mutex' is not a member of 'std'
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:103:29: error: template argument 1 is invalid
   std::shared_ptr<std::mutex> m_mutex;
                             ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h: In constructor 'priority_condition_variable::priority_condition_variable()':
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:29:60: error: 'mutex' is not a member of 'std'
   priority_condition_variable() : m_mutex(std::make_shared<std::mutex>()) {}
                                                            ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:29:60: error: 'mutex' is not a member of 'std'
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:29:72: error: no matching function for call to 'make_shared()'
   priority_condition_variable() : m_mutex(std::make_shared<std::mutex>()) {}
                                                                        ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:29:72: note: candidate is:
In file included from c:\mingw\lib\gcc\mingw32\4.8.1\include\c++\memory:82:0,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/Base.h:84,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/ErrorBase.h:10,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/Commands/Command.h:11,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/Commands/CommandGroup.h:11,
                 from ..\src\Commands\WaterBridge.h:16,
                 from ..\src\Commands\WaterBridge.cpp:13:
c:\mingw\lib\gcc\mingw32\4.8.1\include\c++\bits\shared_ptr.h:610:5: note: template<class _Tp, class ... _Args> std::shared_ptr<_Tp1> std::make_shared(_Args&& ...)
     make_shared(_Args&&... __args)
     ^
c:\mingw\lib\gcc\mingw32\4.8.1\include\c++\bits\shared_ptr.h:610:5: note:   template argument deduction/substitution failed:
In file included from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/Semaphore.hpp:3:0,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/HAL.hpp:24,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/SPI.h:10,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/ADXL345_SPI.h:12,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/WPILib.h:16,
                 from ..\src\Commands\../Robot.h:15,
                 from ..\src\Commands\Unscoop.h:17,
                 from ..\src\Commands\WaterBridge.h:17,
                 from ..\src\Commands\WaterBridge.cpp:13:
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:29:72: error: template argument 1 is invalid
   priority_condition_variable() : m_mutex(std::make_shared<std::mutex>()) {}
                                                                        ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h: In member function 'void priority_condition_variable::notify_one()':
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:36:21: error: 'mutex' is not a member of 'std'
     std::lock_guard<std::mutex> lock(*m_mutex);
                     ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:36:21: error: 'mutex' is not a member of 'std'
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:36:31: error: template argument 1 is invalid
     std::lock_guard<std::mutex> lock(*m_mutex);
                               ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:36:37: error: invalid type in declaration before '(' token
     std::lock_guard<std::mutex> lock(*m_mutex);
                                     ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:36:39: error: invalid type argument of unary '*' (have 'int')
     std::lock_guard<std::mutex> lock(*m_mutex);
                                       ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:37:5: error: 'm_cond' was not declared in this scope
     m_cond.notify_one();
     ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:36:33: warning: unused variable 'lock' -Wunused-variable]
     std::lock_guard<std::mutex> lock(*m_mutex);
                                 ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h: In member function 'void priority_condition_variable::notify_all()':
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:41:21: error: 'mutex' is not a member of 'std'
     std::lock_guard<std::mutex> lock(*m_mutex);
                     ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:41:21: error: 'mutex' is not a member of 'std'
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:41:31: error: template argument 1 is invalid
     std::lock_guard<std::mutex> lock(*m_mutex);
                               ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:41:37: error: invalid type in declaration before '(' token
     std::lock_guard<std::mutex> lock(*m_mutex);
                                     ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:41:39: error: invalid type argument of unary '*' (have 'int')
     std::lock_guard<std::mutex> lock(*m_mutex);
                                       ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:42:5: error: 'm_cond' was not declared in this scope
     m_cond.notify_all();
     ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:41:33: warning: unused variable 'lock' -Wunused-variable]
     std::lock_guard<std::mutex> lock(*m_mutex);
                                 ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h: In member function 'void priority_condition_variable::wait(Lock&)':
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:47:21: error: 'mutex' is not a member of 'std'
     std::shared_ptr<std::mutex> _mutex = m_mutex;
                     ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:47:21: error: 'mutex' is not a member of 'std'
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:47:31: error: template argument 1 is invalid
     std::shared_ptr<std::mutex> _mutex = m_mutex;
                               ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:47:40: error: invalid type in declaration before '=' token
     std::shared_ptr<std::mutex> _mutex = m_mutex;
                                        ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:48:22: error: 'mutex' is not a member of 'std'
     std::unique_lock<std::mutex> my_lock(*_mutex);
                      ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:48:22: error: 'mutex' is not a member of 'std'
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:48:32: error: template argument 1 is invalid
     std::unique_lock<std::mutex> my_lock(*_mutex);
                                ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:48:41: error: invalid type in declaration before '(' token
     std::unique_lock<std::mutex> my_lock(*_mutex);
                                         ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:48:43: error: invalid type argument of unary '*' (have 'int')
     std::unique_lock<std::mutex> my_lock(*_mutex);
                                           ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:53:22: error: 'mutex' is not a member of 'std'
     std::unique_lock<std::mutex> my_lock2(std::move(my_lock));
                      ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:53:22: error: 'mutex' is not a member of 'std'
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:53:32: error: template argument 1 is invalid
     std::unique_lock<std::mutex> my_lock2(std::move(my_lock));
                                ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:53:42: error: invalid type in declaration before '(' token
     std::unique_lock<std::mutex> my_lock2(std::move(my_lock));
                                          ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:54:5: error: 'm_cond' was not declared in this scope
     m_cond.wait(my_lock2);
     ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h: In member function 'bool priority_condition_variable::wait_until(Lock&, const std::chrono::time_point<_Clock, _Dur>&, Predicate)':
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:79:43: error: 'std::cv_status' has not been declared
       if (wait_until(lock, atime) == std::cv_status::timeout) {
                                           ^
In file included from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/HAL.hpp:24:0,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/SPI.h:10,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/ADXL345_SPI.h:12,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/WPILib.h:16,
                 from ..\src\Commands\../Robot.h:15,
                 from ..\src\Commands\Unscoop.h:17,
                 from ..\src\Commands\WaterBridge.h:17,
                 from ..\src\Commands\WaterBridge.cpp:13:
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/Semaphore.hpp: At global scope:
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/Semaphore.hpp:8:9: error: 'native_handle_type' in 'class priority_condition_variable' does not name a type
 typedef priority_condition_variable::native_handle_type NATIVE_MULTIWAIT_ID;
         ^
In file included from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/HAL.hpp:25:0,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/SPI.h:10,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/ADXL345_SPI.h:12,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/WPILib.h:16,
                 from ..\src\Commands\../Robot.h:15,
                 from ..\src\Commands\Unscoop.h:17,
                 from ..\src\Commands\WaterBridge.h:17,
                 from ..\src\Commands\WaterBridge.cpp:13:
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/Task.hpp:4:1: error: 'include' does not name a type
 include <pthread.h>
 ^
In file included from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/WPILib.h:30:0,
                 from ..\src\Commands\../Robot.h:15,
                 from ..\src\Commands\Unscoop.h:17,
                 from ..\src\Commands\WaterBridge.h:17,
                 from ..\src\Commands\WaterBridge.cpp:13:
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/CameraServer.h:36:3: error: 'thread' in namespace 'std' does not name a type
   std::thread m_serverThread;
   ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/CameraServer.h:37:3: error: 'thread' in namespace 'std' does not name a type
   std::thread m_captureThread;
   ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/CameraServer.h:39:3: error: 'condition_variable_any' in namespace 'std' does not name a type
   std::condition_variable_any m_newImageVariable;
   ^
In file included from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/CANJaguar.h:16:0,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/WPILib.h:31,
                 from ..\src\Commands\../Robot.h:15,
                 from ..\src\Commands\Unscoop.h:17,
                 from ..\src\Commands\WaterBridge.h:17,
                 from ..\src\Commands\WaterBridge.cpp:13:
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/cpp/Semaphore.hpp:28:3: error: 'condition_variable_any' in namespace 'std' does not name a type
   std::condition_variable_any m_condition;
   ^
In file included from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/Commands/Scheduler.h:14:0,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/LiveWindow/LiveWindow.h:13,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/PIDInterface.h:12,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/CANTalon.h:14,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/WPILib.h:32,
                 from ..\src\Commands\../Robot.h:15,
                 from ..\src\Commands\Unscoop.h:17,
                 from ..\src\Commands\WaterBridge.h:17,
                 from ..\src\Commands\WaterBridge.cpp:13:
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/networktables/NetworkTable.h:25:3: error: 'mutex' in namespace 'std' does not name a type
   std::mutex m_mutex;
   ^
In file included from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/CANTalon.h:15:0,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/WPILib.h:32,
                 from ..\src\Commands\../Robot.h:15,
                 from ..\src\Commands\Unscoop.h:17,
                 from ..\src\Commands\WaterBridge.h:17,
                 from ..\src\Commands\WaterBridge.cpp:13:
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/HAL/CanTalonSRX.h:268:3: error: 'mutex' in namespace 'std' does not name a type
   std::mutex _mutMotProf;
   ^
In file included from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/DriverStation.h:12:0,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/WPILib.h:51,
                 from ..\src\Commands\../Robot.h:15,
                 from ..\src\Commands\Unscoop.h:17,
                 from ..\src\Commands\WaterBridge.h:17,
                 from ..\src\Commands\WaterBridge.cpp:13:
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/Task.h:36:3: error: 'thread' in namespace 'std' does not name a type
   std::thread::id get_id() const noexcept;
   ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/Task.h:37:3: error: 'thread' in namespace 'std' does not name a type
   std::thread::native_handle_type native_handle();
   ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/Task.h:48:3: error: 'thread' in namespace 'std' does not name a type
   std::thread m_thread;
   ^
In file included from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/Task.h:53:0,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/DriverStation.h:12,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/WPILib.h:51,
                 from ..\src\Commands\../Robot.h:15,
                 from ..\src\Commands\Unscoop.h:17,
                 from ..\src\Commands\WaterBridge.h:17,
                 from ..\src\Commands\WaterBridge.cpp:13:
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/Task.inc: In constructor 'Task::Task(const string&, Function&&, Args&& ...)':
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/Task.inc:25:3: error: 'm_thread' was not declared in this scope
   m_thread = std::thread(std::forward<std::decay_t<Function>>(function),
   ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/Task.inc:25:14: error: 'thread' is not a member of 'std'
   m_thread = std::thread(std::forward<std::decay_t<Function>>(function),
              ^
In file included from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/WPILib.h:51:0,
                 from ..\src\Commands\../Robot.h:15,
                 from ..\src\Commands\Unscoop.h:17,
                 from ..\src\Commands\WaterBridge.h:17,
                 from ..\src\Commands\WaterBridge.cpp:13:
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/DriverStation.h: At global scope:
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/DriverStation.h:111:3: error: 'condition_variable_any' in namespace 'std' does not name a type
   std::condition_variable_any m_waitForDataCond;
   ^
In file included from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/IterativeRobot.h:11:0,
                 from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/WPILib.h:61,
                 from ..\src\Commands\../Robot.h:15,
                 from ..\src\Commands\Unscoop.h:17,
                 from ..\src\Commands\WaterBridge.h:17,
                 from ..\src\Commands\WaterBridge.cpp:13:
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/RobotBase.h:53:30: error: 'FUNCPTR' has not been declared
   static void startRobotTask(FUNCPTR factory);
                              ^
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/RobotBase.h:54:25: error: 'FUNCPTR' has not been declared
   static void robotTask(FUNCPTR factory, Task *task);
                         ^
In file included from C:\Users\NerdsOfPrey/wpilib/cpp/current/include/WPILib.h:95:0,
                 from ..\src\Commands\../Robot.h:15,
                 from ..\src\Commands\Unscoop.h:17,
                 from ..\src\Commands\WaterBridge.h:17,
                 from ..\src\Commands\WaterBridge.cpp:13:
C:\Users\NerdsOfPrey/wpilib/cpp/current/include/Vision/AxisCamera.h:94:3: error: 'thread' in namespace 'std' does not name a type
   std::thread m_captureThread;
   ^

21:14:24 Build Finished (took 1s.996ms)

For MinGW (from a different computer, may be different):

 
19:19:13 **** Incremental Build of configuration Debug for project Stronghold with onboard vision ****
Info: Internal Builder is used for build
g++ "-IC:\\Users\\Brandon/wpilib/cpp/current/include" -IC:/visionpls/_Includes/OpenCv/2.4.10 "-IC:\\Users\\Brandon\\Desktop\\Brandon C++ Projects/Stronghold With New RobotBuilder Code/src" -O0 -g3 -Wall -c -fmessage-length=0 -std=c++11 -o "src\\Commands\\AutonomousDriveForward.o" "..\\src\\Commands\\AutonomousDriveForward.cpp" 
In file included from C:\Users\Brandon/wpilib/cpp/current/include/ErrorBase.h:13:0,
                 from C:\Users\Brandon/wpilib/cpp/current/include/Commands/Subsystem.h:11,
                 from ..\src\Commands\AutonomousDriveForward.h:16,
                 from ..\src\Commands\AutonomousDriveForward.cpp:12:
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_mutex.h:49:59: error: cannot convert '<brace-enclosed initializer list>' to 'pthread_mutex_t' in initialization
       {0, 0, 0, 0x20 | PTHREAD_MUTEX_RECURSIVE_NP, 0, {0}}};
                                                           ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_mutex.h:79:30: error: cannot convert '<brace-enclosed initializer list>' to 'pthread_mutex_t' in initialization
       {0, 0, 0, 0x20, 0, {0}}};
                              ^
In file included from C:\Users\Brandon/wpilib/cpp/current/include/HAL/Semaphore.hpp:3:0,
                 from C:\Users\Brandon/wpilib/cpp/current/include/HAL/HAL.hpp:24,
                 from C:\Users\Brandon/wpilib/cpp/current/include/SPI.h:10,
                 from C:\Users\Brandon/wpilib/cpp/current/include/ADXL345_SPI.h:12,
                 from C:\Users\Brandon/wpilib/cpp/current/include/WPILib.h:16,
                 from ..\src\Commands\../Robot.h:15,
                 from ..\src\Commands\AutonomousDriveForward.h:17,
                 from ..\src\Commands\AutonomousDriveForward.cpp:12:
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:27:11: error: 'condition_variable' in namespace 'std' does not name a type
   typedef std::condition_variable::native_handle_type native_handle_type;
           ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:63:3: error: 'cv_status' in namespace 'std' does not name a type
   std::cv_status wait_until(Lock& _lock,
   ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:87:3: error: 'cv_status' in namespace 'std' does not name a type
   std::cv_status wait_for(Lock& lock, const std::chrono::duration<Rep, Period>& rtime) {
   ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:97:3: error: 'native_handle_type' does not name a type
   native_handle_type native_handle() {
   ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:102:3: error: 'condition_variable' in namespace 'std' does not name a type
   std::condition_variable m_cond;
   ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:103:19: error: 'mutex' is not a member of 'std'
   std::shared_ptr<std::mutex> m_mutex;
                   ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:103:19: error: 'mutex' is not a member of 'std'
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:103:29: error: template argument 1 is invalid
   std::shared_ptr<std::mutex> m_mutex;
                             ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h: In constructor 'priority_condition_variable::priority_condition_variable()':
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:29:60: error: 'mutex' is not a member of 'std'
   priority_condition_variable() : m_mutex(std::make_shared<std::mutex>()) {}
                                                            ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:29:60: error: 'mutex' is not a member of 'std'
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:29:72: error: no matching function for call to 'make_shared()'
   priority_condition_variable() : m_mutex(std::make_shared<std::mutex>()) {}
                                                                        ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:29:72: note: candidate is:
In file included from c:\mingw\lib\gcc\mingw32\4.8.1\include\c++\memory:82:0,
                 from C:\Users\Brandon/wpilib/cpp/current/include/Base.h:84,
                 from C:\Users\Brandon/wpilib/cpp/current/include/ErrorBase.h:10,
                 from C:\Users\Brandon/wpilib/cpp/current/include/Commands/Subsystem.h:11,
                 from ..\src\Commands\AutonomousDriveForward.h:16,
                 from ..\src\Commands\AutonomousDriveForward.cpp:12:
c:\mingw\lib\gcc\mingw32\4.8.1\include\c++\bits\shared_ptr.h:610:5: note: template<class _Tp, class ... _Args> std::shared_ptr<_Tp1> std::make_shared(_Args&& ...)
     make_shared(_Args&&... __args)
     ^
c:\mingw\lib\gcc\mingw32\4.8.1\include\c++\bits\shared_ptr.h:610:5: note:   template argument deduction/substitution failed:
In file included from C:\Users\Brandon/wpilib/cpp/current/include/HAL/Semaphore.hpp:3:0,
                 from C:\Users\Brandon/wpilib/cpp/current/include/HAL/HAL.hpp:24,
                 from C:\Users\Brandon/wpilib/cpp/current/include/SPI.h:10,
                 from C:\Users\Brandon/wpilib/cpp/current/include/ADXL345_SPI.h:12,
                 from C:\Users\Brandon/wpilib/cpp/current/include/WPILib.h:16,
                 from ..\src\Commands\../Robot.h:15,
                 from ..\src\Commands\AutonomousDriveForward.h:17,
                 from ..\src\Commands\AutonomousDriveForward.cpp:12:
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:29:72: error: template argument 1 is invalid
   priority_condition_variable() : m_mutex(std::make_shared<std::mutex>()) {}
                                                                        ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h: In member function 'void priority_condition_variable::notify_one()':
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:36:21: error: 'mutex' is not a member of 'std'
     std::lock_guard<std::mutex> lock(*m_mutex);
                     ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:36:21: error: 'mutex' is not a member of 'std'
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:36:31: error: template argument 1 is invalid
     std::lock_guard<std::mutex> lock(*m_mutex);
                               ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:36:37: error: invalid type in declaration before '(' token
     std::lock_guard<std::mutex> lock(*m_mutex);
                                     ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:36:39: error: invalid type argument of unary '*' (have 'int')
     std::lock_guard<std::mutex> lock(*m_mutex);
                                       ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:37:5: error: 'm_cond' was not declared in this scope
     m_cond.notify_one();
     ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:36:33: warning: unused variable 'lock' -Wunused-variable]
     std::lock_guard<std::mutex> lock(*m_mutex);
                                 ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h: In member function 'void priority_condition_variable::notify_all()':
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:41:21: error: 'mutex' is not a member of 'std'
     std::lock_guard<std::mutex> lock(*m_mutex);
                     ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:41:21: error: 'mutex' is not a member of 'std'
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:41:31: error: template argument 1 is invalid
     std::lock_guard<std::mutex> lock(*m_mutex);
                               ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:41:37: error: invalid type in declaration before '(' token
     std::lock_guard<std::mutex> lock(*m_mutex);
                                     ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:41:39: error: invalid type argument of unary '*' (have 'int')
     std::lock_guard<std::mutex> lock(*m_mutex);
                                       ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:42:5: error: 'm_cond' was not declared in this scope
     m_cond.notify_all();
     ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:41:33: warning: unused variable 'lock' -Wunused-variable]
     std::lock_guard<std::mutex> lock(*m_mutex);
                                 ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h: In member function 'void priority_condition_variable::wait(Lock&)':
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:47:21: error: 'mutex' is not a member of 'std'
     std::shared_ptr<std::mutex> _mutex = m_mutex;
                     ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:47:21: error: 'mutex' is not a member of 'std'
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:47:31: error: template argument 1 is invalid
     std::shared_ptr<std::mutex> _mutex = m_mutex;
                               ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:47:40: error: invalid type in declaration before '=' token
     std::shared_ptr<std::mutex> _mutex = m_mutex;
                                        ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:48:22: error: 'mutex' is not a member of 'std'
     std::unique_lock<std::mutex> my_lock(*_mutex);
                      ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:48:22: error: 'mutex' is not a member of 'std'
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:48:32: error: template argument 1 is invalid
     std::unique_lock<std::mutex> my_lock(*_mutex);
                                ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:48:41: error: invalid type in declaration before '(' token
     std::unique_lock<std::mutex> my_lock(*_mutex);
                                         ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:48:43: error: invalid type argument of unary '*' (have 'int')
     std::unique_lock<std::mutex> my_lock(*_mutex);
                                           ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:53:22: error: 'mutex' is not a member of 'std'
     std::unique_lock<std::mutex> my_lock2(std::move(my_lock));
                      ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:53:22: error: 'mutex' is not a member of 'std'
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:53:32: error: template argument 1 is invalid
     std::unique_lock<std::mutex> my_lock2(std::move(my_lock));
                                ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:53:42: error: invalid type in declaration before '(' token
     std::unique_lock<std::mutex> my_lock2(std::move(my_lock));
                                          ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:54:5: error: 'm_cond' was not declared in this scope
     m_cond.wait(my_lock2);
     ^
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h: In member function 'bool priority_condition_variable::wait_until(Lock&, const std::chrono::time_point<_Clock, _Dur>&, Predicate)':
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/priority_condition_variable.h:79:43: error: 'std::cv_status' has not been declared
       if (wait_until(lock, atime) == std::cv_status::timeout) {
                                           ^
In file included from C:\Users\Brandon/wpilib/cpp/current/include/HAL/HAL.hpp:24:0,
                 from C:\Users\Brandon/wpilib/cpp/current/include/SPI.h:10,
                 from C:\Users\Brandon/wpilib/cpp/current/include/ADXL345_SPI.h:12,
                 from C:\Users\Brandon/wpilib/cpp/current/include/WPILib.h:16,
                 from ..\src\Commands\../Robot.h:15,
                 from ..\src\Commands\AutonomousDriveForward.h:17,
                 from ..\src\Commands\AutonomousDriveForward.cpp:12:
C:\Users\Brandon/wpilib/cpp/current/include/HAL/Semaphore.hpp: At global scope:
C:\Users\Brandon/wpilib/cpp/current/include/HAL/Semaphore.hpp:8:9: error: 'native_handle_type' in 'class priority_condition_variable' does not name a type
 typedef priority_condition_variable::native_handle_type NATIVE_MULTIWAIT_ID;
         ^
In file included from C:\Users\Brandon/wpilib/cpp/current/include/WPILib.h:30:0,
                 from ..\src\Commands\../Robot.h:15,
                 from ..\src\Commands\AutonomousDriveForward.h:17,
                 from ..\src\Commands\AutonomousDriveForward.cpp:12:
C:\Users\Brandon/wpilib/cpp/current/include/CameraServer.h:36:3: error: 'thread' in namespace 'std' does not name a type
   std::thread m_serverThread;
   ^
C:\Users\Brandon/wpilib/cpp/current/include/CameraServer.h:37:3: error: 'thread' in namespace 'std' does not name a type
   std::thread m_captureThread;
   ^
C:\Users\Brandon/wpilib/cpp/current/include/CameraServer.h:39:3: error: 'condition_variable_any' in namespace 'std' does not name a type
   std::condition_variable_any m_newImageVariable;
   ^
In file included from C:\Users\Brandon/wpilib/cpp/current/include/CANJaguar.h:16:0,
                 from C:\Users\Brandon/wpilib/cpp/current/include/WPILib.h:31,
                 from ..\src\Commands\../Robot.h:15,
                 from ..\src\Commands\AutonomousDriveForward.h:17,
                 from ..\src\Commands\AutonomousDriveForward.cpp:12:
C:\Users\Brandon/wpilib/cpp/current/include/HAL/cpp/Semaphore.hpp:28:3: error: 'condition_variable_any' in namespace 'std' does not name a type
   std::condition_variable_any m_condition;
   ^
In file included from C:\Users\Brandon/wpilib/cpp/current/include/Commands/Scheduler.h:14:0,
                 from C:\Users\Brandon/wpilib/cpp/current/include/LiveWindow/LiveWindow.h:13,
                 from C:\Users\Brandon/wpilib/cpp/current/include/PIDInterface.h:12,
                 from C:\Users\Brandon/wpilib/cpp/current/include/CANTalon.h:14,
                 from C:\Users\Brandon/wpilib/cpp/current/include/WPILib.h:32,
                 from ..\src\Commands\../Robot.h:15,
                 from ..\src\Commands\AutonomousDriveForward.h:17,
                 from ..\src\Commands\AutonomousDriveForward.cpp:12:
C:\Users\Brandon/wpilib/cpp/current/include/networktables/NetworkTable.h:25:3: error: 'mutex' in namespace 'std' does not name a type
   std::mutex m_mutex;
   ^
In file included from C:\Users\Brandon/wpilib/cpp/current/include/CANTalon.h:15:0,
                 from C:\Users\Brandon/wpilib/cpp/current/include/WPILib.h:32,
                 from ..\src\Commands\../Robot.h:15,
                 from ..\src\Commands\AutonomousDriveForward.h:17,
                 from ..\src\Commands\AutonomousDriveForward.cpp:12:
C:\Users\Brandon/wpilib/cpp/current/include/HAL/CanTalonSRX.h:268:3: error: 'mutex' in namespace 'std' does not name a type
   std::mutex _mutMotProf;
   ^
In file included from C:\Users\Brandon/wpilib/cpp/current/include/DriverStation.h:12:0,
                 from C:\Users\Brandon/wpilib/cpp/current/include/WPILib.h:51,
                 from ..\src\Commands\../Robot.h:15,
                 from ..\src\Commands\AutonomousDriveForward.h:17,
                 from ..\src\Commands\AutonomousDriveForward.cpp:12:
C:\Users\Brandon/wpilib/cpp/current/include/Task.h:36:3: error: 'thread' in namespace 'std' does not name a type
   std::thread::id get_id() const noexcept;
   ^
C:\Users\Brandon/wpilib/cpp/current/include/Task.h:37:3: error: 'thread' in namespace 'std' does not name a type
   std::thread::native_handle_type native_handle();
   ^
C:\Users\Brandon/wpilib/cpp/current/include/Task.h:48:3: error: 'thread' in namespace 'std' does not name a type
   std::thread m_thread;
   ^
In file included from C:\Users\Brandon/wpilib/cpp/current/include/Task.h:53:0,
                 from C:\Users\Brandon/wpilib/cpp/current/include/DriverStation.h:12,
                 from C:\Users\Brandon/wpilib/cpp/current/include/WPILib.h:51,
                 from ..\src\Commands\../Robot.h:15,
                 from ..\src\Commands\AutonomousDriveForward.h:17,
                 from ..\src\Commands\AutonomousDriveForward.cpp:12:
C:\Users\Brandon/wpilib/cpp/current/include/Task.inc: In constructor 'Task::Task(const string&, Function&&, Args&& ...)':
C:\Users\Brandon/wpilib/cpp/current/include/Task.inc:25:3: error: 'm_thread' was not declared in this scope
   m_thread = std::thread(std::forward<std::decay_t<Function>>(function),
   ^
C:\Users\Brandon/wpilib/cpp/current/include/Task.inc:25:14: error: 'thread' is not a member of 'std'
   m_thread = std::thread(std::forward<std::decay_t<Function>>(function),
              ^
In file included from C:\Users\Brandon/wpilib/cpp/current/include/WPILib.h:51:0,
                 from ..\src\Commands\../Robot.h:15,
                 from ..\src\Commands\AutonomousDriveForward.h:17,
                 from ..\src\Commands\AutonomousDriveForward.cpp:12:
C:\Users\Brandon/wpilib/cpp/current/include/DriverStation.h: At global scope:
C:\Users\Brandon/wpilib/cpp/current/include/DriverStation.h:111:3: error: 'condition_variable_any' in namespace 'std' does not name a type
   std::condition_variable_any m_waitForDataCond;
   ^
In file included from C:\Users\Brandon/wpilib/cpp/current/include/WPILib.h:95:0,
                 from ..\src\Commands\../Robot.h:15,
                 from ..\src\Commands\AutonomousDriveForward.h:17,
                 from ..\src\Commands\AutonomousDriveForward.cpp:12:
C:\Users\Brandon/wpilib/cpp/current/include/Vision/AxisCamera.h:94:3: error: 'thread' in namespace 'std' does not name a type
   std::thread m_captureThread;
   ^

19:19:19 Build Finished (took 5s.715ms)

You should not be using cygwin or mingw. You should be using the FRC specific toolchain (Installing the C++ Toolchains here: http://wpilib.screenstepslive.com/s/4485/m/13810/l/145002-installing-eclipse-c-java)

Yes I understand. Installing just those things and then creating code gives me the error that wpilib is missing pthread.h. So I install Mingw to fix the probelm then I get the other errors.

Ok, post the complete error log from the correct compiler then. These two error logs from the wrong compilers are not helpful.

How do I use the compiler then? Those were the errors I get when I use the cross compiler with the cdt internal builder. I also got these same errors using it one a computer with Mingw or cyagwin never installed.

We are having the same issues - C++ code that runs perfectly on 2015 in Eclipse throws multiple errors on the 2016 Eclipse. We have reinstalled with no help and are stuck with competition next week. Any help greatly appreciated!

It looks like Mingw includes are interfering with toolchain includes.
You need to remove Mingw and Cygwin from your build computers.
It also looks like the toolchain compilers are not being called. Create a new “example wpilib project” in Eclipse and see if that builds. If it does, you’ll need to create a new “wpilib robot project” and copy all of your code into that.